The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1

doi:10.1016/j.dib.2018.10.051

	The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1
	Yin, Panqing 1; Zhang, Qin 2; Zhu, Jianming 3; Wu, Guoqiang1 ; Yin, Sanjun 4; Ma, Zhenhua 4; Zhou, Jin 3
	2018-12-01
发表期刊	DATA IN BRIEF
ISSN	2352-3409
卷号	21 页码:966-971
摘要	Herein, an algicidal strain, Stenotrophomonas rhizophila GA1, was isolated from a marine dinoflagellate and its genome was sequenced using next-generation sequencing technology. The genome size of S. rhizophila GAl was determined to be 5.92 Mb with a G+C content of 62.39%, comprising eight scaffolds of 67 contigs. A total of 4579 functional proteins were assigned according to COG categories. In silico genome annotation protocols identified multiple putative Luxl-like genes located in the upstream position at contig 4. The thin-layer chromatography analysis showed that three kinds of acyl homoserine lactone (AHL) signals could be produced by S. rhizophila GAl. This work describes an algicidal bacterium capable of generating AHL molecules for its ecological adaptation. The annotated genome sequence of this strain may represent a valuable tool for studying algae-bacterium interactions and developing microbial methods to control harmful algae. The genome scaffolds generated are available in the National Center Biotechnology Information (NCBI) BioProject with accession number PRJNA485554. (C) 2018 The Authors. Published by Elsevier Inc.
DOI	10.1016/j.dib.2018.10.051
收录类别	ESCI
语种	英语
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:000457925900130
出版者	ELSEVIER SCIENCE BV
引用统计	无
文献类型	期刊论文
条目标识符	https://ir.lut.edu.cn/handle/2XXMBERH/155660
专题	生命科学与工程学院
通讯作者	Zhou, Jin
作者单位	1.Lanzhou Univ Technol, Sch Life Sci & Engn, Lanzhou 730050, Gansu, Peoples R China; 2.Jiangxi Univ Finance & Econ, Nanchang 330013, Jiangxi, Peoples R China; 3.Tsinghua Univ, Grad Sch Shenzhen, Devis Ocean Sci & Technol, Shenzhen 518055, Guangdong, Peoples R China; 4.Hengchuang Genet Biotech Co Ltd, Shenzhen 518055, Guangdong, Peoples R China
第一作者单位	生命科学与工程学院
第一作者的第一单位	生命科学与工程学院
推荐引用方式 GB/T 7714	Yin, Panqing,Zhang, Qin,Zhu, Jianming,et al. The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1[J]. DATA IN BRIEF,2018,21:966-971.
APA	Yin, Panqing.,Zhang, Qin.,Zhu, Jianming.,Wu, Guoqiang.,Yin, Sanjun.,...&Zhou, Jin.(2018).The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1.DATA IN BRIEF,21,966-971.
MLA	Yin, Panqing,et al."The data of genomic and phenotypic profiles of the N-acyl homoserine lactone-producing algicidal bacterium Stenotrophomonas rhizophila GA1".DATA IN BRIEF 21(2018):966-971.